A smart way to easily organize the deployment, the data management and the execution of a Snakemake based workflows.
tags: Ansible, Conda, Docker, next-generation sequencing, pipelines, Python, Snakemake
tags: Docker, LIMS, message queue, next-generation sequencing, Python
Based on an AngularJS and a REST web-service, a custom web interface to expose the LIMS server to the wet-lab technicians.
tags: AngularJS, Docker, LIMS, Python, REST API
Practical feasibility of creating and running large-scale Galaxy-based variant calling pipelines on microservice infrastructures
tags: Bioconda, Docker, GalaxyProject, Kubernetes, OpenStack
Large scale biomedical computation on OMERO
tags: Data-intensive Biology, OMERO, Python, traceability
ORIONE is a web based platform to build complex, reproducible workflows for NGS microbiology data analysis
tags: Bioinformatics, GalaxyProject, Microbiology, reproducible workflows
